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Chapter 9

Viruses

Book Version 6
By Boundless
Boundless Microbiology
Microbiology
by Boundless
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Section 1
Overview of Viruses
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Discovery and Detection of Viruses

Viruses are infectious particles about 100 times smaller than bacteria and can only be observed by electron microscopy.

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Nature of the Virion

A virion is a complete viral particle consisting of RNA or DNA surrounded by a protein shell, constituting the infective form of a virus.

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Viral Genomes

The viral genome is the complete genetic complement contained in a DNA or RNA molecule in a virus.

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Host Range

A virus' host range is the range of cell types and host species a virus is able to infect.

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Viral Size

Most viruses range in size from 5 to 300 nanometers (nm), although some Paramyxoviruses can be up to 14,000 nm long.

Section 2
Structure of Viruses
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Viral Morphology

Viruses of all shapes and sizes consist of a nucleic acid core, an outer protein coating or capsid, and sometimes an outer envelope.

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General Morphology

Viruses have a variety of shapes and structures.

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Complex and Asymmetrical Virus Particles

Complex viruses are often asymetrical or symetrical in combination with other structures such as a tail.

Section 3
Classifying Viruses
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The International Committee on Taxonomy of Viruses

The International Committee on Taxonomy of Viruses (ICTV) establishes guidelines to maintain viral family uniformity.

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The Baltimore Virus Classification

The Baltimore classification groups viruses into families depending on their type of genome.

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Evolution of Viruses

The evolution of viruses is speculative as they do not fossilize; biochemical and genetic information is used to create virus histories.

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Medical Importance of Viruses

Viruses are obligate intracellular parasites that hijack a host cell's machinery to replicate, thereby causing disease.

Section 4
Culturing Viruses
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Batch Culture of Bacteriophages

Bacteriophage cultures require host cells in which the virus or phage multiply.

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Tissue Culture of Animal Viruses

Viruses cannot be grown in standard microbiological broths or on agar plates, instead they have be to cultured inside suitable host cells.

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Inoculation of Live Animals

Live animal inoculation is a method used to cultivate viruses.

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Viral Identification

The genetic material within virus particles varies considerably between different types of viruses.

Section 5
Viral Replication
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General Features of Virus Replication

Virologists describe the formation of viruses during the infection process in target host cells as viral replication.

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Steps of Virus Infections

Viral infection involves the incorporation of viral DNA into a host cell, replication of that material, and the release of the new viruses.

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Tissue Tropism in Animal Viruses

Host tropism refers to the way in which viruses/pathogens determine which cells become infected by a given pathogen.

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Animal Viruses

Animal viruses have their genetic material copied by a host cell after which they are released into the environment to cause disease.

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Plant Virus Life Cycles

Plant viruses are often spread from plant to plant by organisms known as vectors.

Section 6
Subviral Entities
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Defective Viruses

Replication defective viruses (also known as satellites) are those that need the presence of other viruses to help them reproduce.

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Viroids

Viroids are plant pathogens without the protein coat that is typical for viruses.

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Prions

Prions are infectious agents composed of protein in a misfolded form, unlike all other known infectious agents which contain nucleic acids.

Section 7
Viral Diversity
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Overview of Bacterial Viruses

Bacteriophages are viruses that infect bacteria and are among the most common and diverse entities in the biosphere.

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RNA Bacteriophages

Nineteen families of bacteriophages that infect bacteria and archaea are currently recognized; of these, only two families have RNA genomes.

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Single-Stranded DNA Bacteriophages

Of the viral families with DNA genomes, only two have single-stranded genomes, the Inoviridae and the Microviridae.

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Double-Stranded DNA Bacteriophages

The dsDNA tailed phages, or Caudovirales, account for 95% of all known phages and possibly make up the majority of phages on the planet.

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Mu: A Double-Stranded Transposable DNA Bacteriophage

Bacteriophage Mu is a temperate bacteriophage that uses DNA-based transposition in its lysogenic cycle.

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Virulent Bacteriophages and T4

T-4 bacteriophage is a virulent bacteriophage that infects E. coli bacteria; virulent bacteriophages have a lytic life cycle.

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Temperate Bacteriophages: Lambda and P1

In virology, temperate refers to the ability of some bacteriophages to display a lysogenic life cycle.

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Viruses of Archaea

Most viruses infecting Archaea are double-stranded DNA viruses that are unrelated to any other form of virus.

Section 8
Positive-Strand RNA Viruses in Animals
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Positive-Strand RNA Viruses of Animals

Positive strand RNA viruses are the single largest group of RNA viruses with 30 families.

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Virus Attachment and Genome Entry

Attachment is a specific binding between viral capsid proteins and specific receptors on the host cellular surface.

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Viral Replication and Gene Expression

RNA viruses are classified into distinct groups depending on their genome and mode of replication.

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Viral Exit

Viruses are released from the host cell following assembly.

Section 9
Negative-Strand RNA Viruses in Animals
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Negative-Strand RNA Viruses of Animals

Negative-strand RNA viruses are single-stranded viruses that can infect several types of animals.

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Attachment and Entry to the Host Cell

For influenza viral propagation to begin, there first must be viron attachment and entry into a host cell.

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Replicative Cycle of Influenza A

Influenza A follows the typical life cycle of most influenza virus: infection and replication are a multi-step process.

Section 10
Retroviruses: Double-Stranded RNA Viruses
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Double-Stranded RNA Viruses: Retroviruses

Retroviruses are viruses that are able to reverse transcribe their RNA genome into DNA, which is then integrated into a host genome.

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HIV Attachment and Host Cell Entry

The attachment and fusion of HIV virons to host cells are crucial to HIV infection.

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Retroviral RNA Genome

The retroviral genome contains the elements needed for reverse transcription and all other activities of a retrovirus.

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Replicative Cycle of HIV

HIV replication depends on a complex, coordinated series of events where the virus integrates into the DNA of host cells.

Section 11
DNA Viruses in Eukaryotes
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Plant DNA Viruses

DNA viruses are relatively rare in plants, but are responsible for a significant amount of crop damage worldwide.

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Replication of Double-Stranded DNA Viruses of Animals

Most double-stranded DNA viruses replicate within the host cell nucleus.

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Double-Stranded DNA Viruses: Herpesviruses

Herpes viruses cause a wide range of latent, recurring infections including oral and genital herpes, cytomegalovirus, and chicken pox.

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Attachment and Entry of Herpes Simplex

Herpes simplex virus attaches to a host's cells with viral envelope glycoproteins, which then allows entry of the viral capsid into the host cell.

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Replication of Herpes Simplex Virus

Herpes replication entails three phases: gene transcription, viral assembly in the nucleus, and budding through the nuclear membrane.

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Immunodeficiency

Immunodeficiency occurs when the immune system cannot appropriately respond to infections.

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Double-Stranded DNA Viruses: Pox Viruses

The poxviruses are a family of large, complex, enveloped DNA viruses that infect a variety of vertebrate and invertebrate hosts.

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Double-Stranded DNA Viruses: Adenoviruses

Adenoviruses are non-enveloped, icosahedral DNA viruses which cause upper respiratory infections, primarily in children.

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Retroviruses and Hepadnavirus

Hepadnaviruses, retroviruses, use virally encoded reverse transcriptase to convert RNA into DNA.

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Treatment of Animal Viral Infections

Interferons play pivotal roles in shaping the immune responses in mammals.

Section 12
Viruses and Cancer
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Cancer Viruses

Viruses can cause cancer by transforming a normal cell into a malignant cell.

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DNA Oncogenic Viruses

An estimated 15 percent of all human cancers worldwide may be attributed to viruses.

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RNA Oncogenic Viruses

An estimated 15% of all human cancers worldwide may be attributed to viruses.

Section 13
Viral Ecology
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Emergence of Viral Pathogens

Many viruses that were once benign later become pathogens through genetic change, which can occur by several mechanisms.

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Viral Roles in Ecosystems

Viruses are immensley important to the turnover of biomass in many ecosystems.

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Viruses
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